留言板

尊敬的读者、作者、审稿人, 关于本刊的投稿、审稿、编辑和出版的任何问题, 您可以本页添加留言。我们将尽快给您答复。谢谢您的支持!

姓名
邮箱
手机号码
标题
留言内容
验证码

Complete mitochondrial genome of the leaf muntjac (Muntiacus putaoensis) and phylogenetics of the genus Muntiacus

Guo-Gang Li Ming-Xia Zhang Kyaw Swa Kyaw-Win Maung Rui-Chang Quan

Guo-Gang Li, Ming-Xia Zhang, Kyaw Swa, Kyaw-Win Maung, Rui-Chang Quan. Complete mitochondrial genome of the leaf muntjac (Muntiacus putaoensis) and phylogenetics of the genus Muntiacus. Zoological Research, 2017, 38(5): 310-316. doi: 10.24272/j.issn.2095-8137.2017.058
Citation: Guo-Gang Li, Ming-Xia Zhang, Kyaw Swa, Kyaw-Win Maung, Rui-Chang Quan. Complete mitochondrial genome of the leaf muntjac (Muntiacus putaoensis) and phylogenetics of the genus Muntiacus. Zoological Research, 2017, 38(5): 310-316. doi: 10.24272/j.issn.2095-8137.2017.058

葡萄麂(Muntiacus putaoensis)线粒体全基因组的测定和麂属动物系统发育研究

doi: 10.24272/j.issn.2095-8137.2017.058
详细信息
    通讯作者:

    Rui-Chang Quan

Complete mitochondrial genome of the leaf muntjac (Muntiacus putaoensis) and phylogenetics of the genus Muntiacus

More Information
    Corresponding author: Rui-Chang Quan
  • 摘要: 葡萄麂(Muntiacus putaoensis)为发现于喜马拉雅(trans-Himalayan)东部地区的土著物种。近年来,其种群数量由于狩猎和栖息地丧失而急剧下降,但由于缺乏有关葡萄麂的遗传学研究,我们对其分布范围和种群数量知之甚少。我们通过PCR直接测序的方法获得了葡萄麂线粒体全基因组序列,同时获得17个个体的2个线粒体片段(ND4L-ND4和Cyt b)。线粒体基因组序列全长为16 349 bp,是环状结构,包含13个蛋白质编码基因,2个rRNA基因,22个tRNA基因和1个控制区(D-loop),其基因组成和排列顺序与目前所报道的绝大多数脊椎动物相似。除了ND6基因和8个tRNA基因由L链编码之外,其他基因都是H链编码的。H链的碱基组成分别为33.1% A,29.3% T,24.2% C和13.4% G,有特别高的A+T含量(62.4%)。基于线粒体全基因组和基因ND4L-ND4的系统发育分析(最大似然法和贝叶斯法)支持葡萄麂为麂属属下一独立种,其姐妹种为大角麂(M.vuquangensis)。然而,当基于Cyt b的分析包括更多麂属动物时,与葡萄麂关系最近的是安南麂(M.truongsonensis)而不是大角麂,结果显示葡萄麂、安南麂与罗氏麂一起(M.rooseveltorum)形成了罗氏麂物种复合体(species complex)。本研究将有助于探索葡萄麂的演化历史和分类地位,也有助于保护其遗传资源。
  • [1] Amato G, Egan MG, Rabinowitz A. 1999. A new species of muntjac, Muntiacus putaoensis (Artiodactyla:Cervidae) from northern Myanmar. Animal Conservation, 2(1):1-7.
    [2] Choudhury A. 2007. Discovery of leaf deer Muntiacus putaoensis in Nagaland with a new northerly record from Arunachal Pradesh. Journal of the Bombay Natural History Society, 104:205-208.
    [3] Choudhury A. 2009. Records and distribution of Gongshan and leaf muntjacs in India. Deer Specialist Group News, 23:2-7.
    [4] Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2:more models, new heuristics and parallel computing. Nature Methods, 9(8):772.
    [5] Datta A, Pansa J, Madhusudan MD, Mishra C. 2003. Discovery of the leaf deer Muntiacus putaoensis in Arunachal Pradesh:An addition to the large mammals of India. Current Science, 84(3):454-458.
    [6] Fontana F, Rubini M. 1990. Chromosomal evolution in Cervidae. Biosystems, 24(2):157-174.
    [7] Giao PM, Tuoc D, Dung VV, Wikramanayake ED, Amato G, Arctander P, MacKinnon JR. 1998. Description of Muntiacus truongsonensis, a new species of muntjac (Artiodactyla:Muntiacidae) from central Vietnam, and implications for conservation. Animal Conservation, 1(1):61-68.
    [8] Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies:assessing the performance of PhyML 3.0. Systematic Biology, 59(3):307-321.
    [9] Hassanin A, Delsuc F, Ropiquet A, Hammer C, Van Vuuren BJ, Matthee C, Ruiz-Garcia M, Catzeflis F, Areskoug V, Nguyen TT. 2012. Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes. Comptes Rendus Biologies, 335(1):32-50.
    [10] Irwin DM, Kocher TD, Wilson AC. 1991. Evolution of the cytochrome b gene of mammals. Journal of Molecular Evolution, 32(2):128-144.
    [11] James J, Ramakrishnan U, Datta A. 2008. Molecular evidence for the occurrence of the leaf deer Muntiacus putaoensis in Arunachal Pradesh, north-east India. Conservation Genetics, 9(4):927-931.
    [12] Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and clustal X version 2.0. Bioinformatics, 23(21):2947-2948.
    [13] Librado P, Rozas J. 2009. DnaSP v5:a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25(11):1451-1452.
    [14] Martins RF, Fickel J, Le M, Van Nguyen T, Nguyen HM, Timmins R, Gan HM, Rovie-Ryan JJ, Lenz D, Forster DW, Wilting A. 2017. Phylogeography of red muntjacs reveals three distinct mitochondrial lineages. BMC Evolutionary Biology, 17:34.
    [15] Rabinowitz A, Khaing ST. 1998. Status of selected mammal species in North Myanmar. Oryx, 32(3):201-208.
    [16] Rabinowitz A, Myint T, Khaing ST, Rabinowitz S. 1999. Description of the leaf deer (Muntiacus putaoensis), a new species of muntjac from northern Myanmar. Journal of Zoology, 249(4):427-435.
    [17] Rao M, Htun S, Zaw T, Myint T. 2010. Hunting, livelihoods and declining wildlife in the Hponkanrazi Wildlife Sanctuary, North Myanmar. Environmental Management, 46(2):143-153.
    [18] Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2:efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61(3):539-542.
    [19] Schaller GB, Rabinowitz A. 2004. Species of barking deer (genus Muntiacus) in the eastern Himalayan region. The Journal of the Bombay Natural History Society, 101(3):442-444.
    [20] Shi YF, Shan XN, Li J, Zhang XM, Zhang HJ. 2003. Sequence and organization of the complete mitochondrial genome of the Indian muntjac (Muntiacus muntjak). Acta Zoologica Sinica, 49(5):629-636. (in Chinese)
    [21] Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5:molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28(10):2731-2739.
    [22] Timmins R J, Duckworth JW. 2016. Muntiacus putaoensis. The IUCN Red List of Threatened Species 2016:e.T136479A22159478. http://dx.doi.org/10.2305/IUCN.UK.2016-1.RLTS.T136479A22159478.en
    [23] Tuoc D, Dung VV, Dawson S, Arctander P, MacKinnon J. 1994. Introduction of a new large mammal species in Vietnam. Science and Technology News, 3:4-12.
    [24] Wang W, Lan H. 2000. Rapid and parallel chromosomal number reductions in muntjac deer inferred from mitochondrial DNA phylogeny. Molecular Biology and Evolution, 17(9):1326-1333.
    [25] Wu HL, Fang SG. 2005. Mitochondrial DNA genetic diversity of black muntjac (Muntiacus crinifrons), an endangered species endemic to China. Biochemical Genetics, 43(7-8):407-416.
    [26] Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics, 20(17):3252-3255.
    [27] Zhang HJ, Li J, Shi YF, Zhang XM, Xu CH, Shan XN. 2004a. Complete sequence of black muntjac (Muntiacus crinifrons) mitochondrial genome. Chinese Journal of Biochemistry and Molecular Biology, 20(4):513-518. (in Chinese)
    [28] Zhang XM, Shan XN, Shi YF, Zhang HJ, Li J, Zheng AL. 2004b. Sequence and organization of Muntiacus reevesi mitochondrial genome. Hereditas (Beijing), 26(6):849-853.
  • [1] Kai He, Xing Chen, Peng Chen, Shui-Wang He, Feng Cheng, Xue-Long Jiang, Kevin Campbell.  A new genus of Asiatic short-tailed shrew (Soricidae, Eulipotyphla) based on molecular and morphological comparisons, Zoological Research. doi: 10.24272/j.issn.2095-8137.2018.058
    [2] Xin ZHENG, Tian-Qi ZHOU, Tao WAN, Anabel PERDICES, Jin-Quan YANG, Xin-Sheng TANG, Zheng-Ping WANG, Li-Qun HUANG, Song HUANG, Shun-Ping HE.  Huangshan population of Chinese Zacco platypus (Teleostei, Cyprinidae) harbors diverse matrilines and high genetic diversity, Zoological Research. doi: 10.13918/j.issn.2095-8137.2016.2.103
    [3] Li-Na LIU, Cheng-Ye WANG.  Complete mitochondrial genome of yellow meal worm(Tenebrio molitor), Zoological Research. doi: 10.13918/j.issn.2095-8137.2014.6.537
    [4] Qinghui SHI, Jing XIA, Xiaoyan SUN, Jiasheng HAO, Qun YANG.  Complete mitogenome of the Painted Jezebel, Delias hyparete Linnaeus (Lepidoptera: Pieridae) and its comparison with other butterfly species, Zoological Research. doi: 10.3724/SP.J.1141.2012.E05-06E111
    [5] CHEN Mei, TIAN Li-Li, SHI Qing-Hui, CAO Tian-Wen, HAO Jia-Sheng.  Complete mitogenome of the Lesser Purple Emperor Apatura ilia (Lepidoptera: Nymphalidae: Apaturinae) and comparison with other nymphalid butterflies, Zoological Research. doi: 10.3724/SP.J.1141.2012.02191
    [6] WANG Wei, ZHU Hua, HU Hong-xia, TIAN ZHAO-hui, DONG Ying.  Heteroplasmy in mtDNA Control Region and Phylogenetics of Five Sturgeons, Zoological Research. doi: 10.3724/SP.J.1141.2009.05487
    [7] LIU Yan, NIE Wen-hui, HUANG Ling, WANG Jin-huan, SU Wei-ting, LIN Chyi Chyang, Y..  Cloning, Characterization, and FISH Mapping of Four Satellite DNAs from Black Muntjac (Muntiacus crinifrons) and Fea’s Muntjac (M. feae), Zoological Research. doi: 10.3724/SP.J.1141.2008.03225
    [8] ZHOU Kai-Ya.  Molecular Phylogenetics of Amphibians and Reptiles, Zoological Research.
    [9] WANG Yue-zhao, ZENG Xiao-mao, FANG Zi-li, WU Guan-fu, Theodore J.Papenfuss, J.Robert Macey.  Study on The Relationships of Classification,Phylogenetics and Distribution of The Genus Phrynocephalus Spp.(Sauria:Agamidae) With The Paleogeographical Changes During Cenozoic Era in Tibet Plateau, Zoological Research.
    [10] LAN Hong, WANG Wen, SHI Li-ming.  Pcr Analysis of DNA From Fur Specimens of Muntjacs (Muntiacus), Zoological Research.
    [11] MA Shi-lai, WANG Ying-xiang, SHI Li-ming.  A New Species of The Genus Muntiacus From Yunnan,China, Zoological Research.
    [12] SHI Li-ming, MA Cai-xia.  A New Karyotype of Muntjac (Muntiacus sp.) From Gongshan County in China, Zoological Research.
    [13] DUAN Xing-sheng, LIU Rui-qing, LIU Ai-hua, LIN Shi-ying.  The Establishment of the Black Muntjac (Muntiacus crinifrons) cell Line and its Growth and cytogenetic Characters, Zoological Research.
    [14] DUAN Xing-sheng, LIU Ai-hua, LIU Rui-qing, LIN Shi-ying.  Study of chromosomal Polymorphism and Kinetochore of the Black Muntjac (Muntiacus crinifrons), Zoological Research.
    [15] LIU Chuang-qing, CUN Xing-sheng, LIU Ai-hua, SEN Shi-ying.  The Effects of Various Media on the Growth of the Black Muntjac (Muntiacus crinifrons) Fibroblasts, Zoological Research.
    [16] The Establishment of Cell Strain Derived Muntjac (Muntiacus Muntjak) and Some of It's Biological Characteristics, Zoological Research.
    [17] CHUANG Xing-sheng, LIU Ai-hua, SENG Shi-ying.  The Karyotype of Muntiacus crinifrons, Zoological Research.
  • 加载中
计量
  • 文章访问数:  521
  • HTML全文浏览量:  76
  • PDF下载量:  262
  • 被引次数: 0
出版历程
  • 收稿日期:  2017-08-10
  • 修回日期:  2017-09-07
  • 刊出日期:  2017-09-18

目录

    /

    返回文章
    返回