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聂守民, 李娟, 王一婷, 安翠红, 周宏, 徐琳, 孙养信, 常文辉, 李辞修, 史卫峰. 2022: 长爪沙鼠中新型星状病毒和副粘病毒的鉴定. 动物学研究, 43(3): 418-422. DOI: 10.24272/j.issn.2095-8137.2021.445
引用本文: 聂守民, 李娟, 王一婷, 安翠红, 周宏, 徐琳, 孙养信, 常文辉, 李辞修, 史卫峰. 2022: 长爪沙鼠中新型星状病毒和副粘病毒的鉴定. 动物学研究, 43(3): 418-422. DOI: 10.24272/j.issn.2095-8137.2021.445
Shou-Min Nie, Juan Li, Yi-Ting Wang, Cui-Hong An, Hong Zhou, Lin Xu, Yang-Xin Sun, Wen-Hui Chang, Ci-Xiu Li, Wei-Feng Shi. 2022. Novel astrovirus and paramyxovirus in Mongolian gerbils (Meriones unguiculatus) from China. Zoological Research, 43(3): 418-422. DOI: 10.24272/j.issn.2095-8137.2021.445
Citation: Shou-Min Nie, Juan Li, Yi-Ting Wang, Cui-Hong An, Hong Zhou, Lin Xu, Yang-Xin Sun, Wen-Hui Chang, Ci-Xiu Li, Wei-Feng Shi. 2022. Novel astrovirus and paramyxovirus in Mongolian gerbils (Meriones unguiculatus) from China. Zoological Research, 43(3): 418-422. DOI: 10.24272/j.issn.2095-8137.2021.445

长爪沙鼠中新型星状病毒和副粘病毒的鉴定

Novel astrovirus and paramyxovirus in Mongolian gerbils (Meriones unguiculatus) from China

  • 摘要: 长爪沙鼠(Meriones unguiculatus)是鼠科的小型啮齿类动物,广泛分布于中国北方的荒漠草原地区,但很少有在野生长爪沙鼠中发现病毒的报道。利用宏转录组测序技术,课题组从陕西省鼠疫疫区的长爪沙鼠中发现了两种新型RNA病毒,分别命名为Gerbil astrovirus (GeAstV)(沙鼠星状病毒)和Gerbil paramyxovirus (GePV)(沙鼠副粘病毒)。基于ORF1a、RdRp和ORF2氨基酸序列的系统发育分析表明,GeAstV与啮齿类和猪相关星状病毒关系最为密切,其中RdRp与猪星状病毒的氨基酸序列同源性最高,为75.07%,而ORF1a和ORF2蛋白与一种啮齿类星状病毒同源性分别为42.14%和35.94%,提示可能存在重组和潜在的跨物种传播事件。对于新发现的GePV,进化分析表明与Tailam virus和Beilong virus关系密切,其中L蛋白与Jeilongvirus属7种病毒的同源性为61%-77%。值得注意的是,GeAstV仅在肺标本中检测到,GePV仅在肾标本中检测到。总之,该研究证明了两种新的沙鼠RNA病毒的存在,加深了人们对野生长爪沙鼠携带病毒多样性的认识。

     

    Abstract: Mongolian gerbils (Meriones unguiculatus) are small rodents belonging to the family Muridae and widely inhabit typical steppes and desert grasslands across northern China. Yet, few viruses in wild M. unguiculatus have been reported. Using meta-transcriptomic sequencing we identified two novel RNA viruses: an astrovirus, denoted Gerbil astrovirus (GeAstV), and a paramyxovirus – Gerbil paramyxovirus (GePV) in Mongolian gerbils captured during October–November 2018 from one of the plagus zones in Shaanxi Province, China. Phylogenetic analysis based on the amino acid sequences of ORF1a, RdRp and ORF2 revealed that GeAstV clustered with rodent- and porcine-associated astroviruses, sharing the highest amino acid identity of 75.07% with a pig astrovirus in RdRp, while sharing 42.14% and 35.94% amino acid identity with a rodent astrovirus in the deduced ORF1a and ORF2 proteins, respectively, exhibiting apparent recombination and potential cross-species transmission events. For the newly discovered GePV, evolutionary analysis demonstrated that it was closely related to Tailam virus and Beilong virus, and shared 61%–77% identity in the L protein with the seven members of the genus Jeilongvirus. Notably, GeAstV was detected only in lung samples while GePV was positive only in kidney samples. In sum, we demonstrate the presence of two novel gerbil RNA viruses, expanding our understanding of viral diversity in wild Mongolian gerbils.

     

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