留言板

尊敬的读者、作者、审稿人, 关于本刊的投稿、审稿、编辑和出版的任何问题, 您可以本页添加留言。我们将尽快给您答复。谢谢您的支持!

姓名
邮箱
手机号码
标题
留言内容
验证码

Mitogenomes of historical type specimens unravel the taxonomy of sportive lemurs (Lepilemur spp.) in Northwest Madagascar

Christian Roos Roberto Portela Miguez Richard Sabin Edward E. Louis Jr. Michael Hofreiter Dietmar Zinner

Christian Roos, Roberto Portela Miguez, Richard Sabin, Edward E. Louis Jr., Michael Hofreiter, Dietmar Zinner. Mitogenomes of historical type specimens unravel the taxonomy of sportive lemurs (Lepilemur spp.) in Northwest Madagascar. Zoological Research, 2021, 42(4): 428-432. doi: 10.24272/j.issn.2095-8137.2021.157
Citation: Christian Roos, Roberto Portela Miguez, Richard Sabin, Edward E. Louis Jr., Michael Hofreiter, Dietmar Zinner. Mitogenomes of historical type specimens unravel the taxonomy of sportive lemurs (Lepilemur spp.) in Northwest Madagascar. Zoological Research, 2021, 42(4): 428-432. doi: 10.24272/j.issn.2095-8137.2021.157

历史模式标本线粒体基因组揭示马达加斯加西北部鼬狐猴属(Lepilemur spp.)的分类

doi: 10.24272/j.issn.2095-8137.2021.157

Mitogenomes of historical type specimens unravel the taxonomy of sportive lemurs (Lepilemur spp.) in Northwest Madagascar

Funds: This study was supported by the German Primate Center
More Information
  • 摘要: 载名模式标本的产地及其准确信息对于正确的分类至关重要,但是这些地理信息常常丢失或不够可靠。由于地名变化或原始记录精度不足, 100–200年前采集的模式标本产地信息就很难追溯。马岛鼬狐猴(Lepilemur dorsalis)就是该问题的一个案例,其模式产地即是被不准确的定为马达加斯加西北部。近年来,在该地区的不同水系(IRSs)间描述了8个鼬狐猴属新物种,但由于缺乏精确的模式产地信息,马岛鼬狐猴(L. dorsalis)的地位仍然存在争议。在这里,我们对L. dorsalisL. grandidieri(目前被认为是L. dorsalis的同物异名)的模式标本测定了线粒体全基因组序列,并将其序列与来自不同水系且已知产地的样本的序列进行了比较。结果表明:L. dorsalisL. grandidieri的两个模式标本具有相同线粒体基因组序列,并且与IRS V区域采集的样本紧密聚在一起,说明L. dorsalis模式产地可以确定在IRS V流域并分布于IRS V流域,同时L. grandidieriL. mittermeieriL. dorsalis的次级同物异名。这一发现证明了模式标本在阐释谱系地理学和分类学问题方面的价值,并厘清了马达加斯加西北部鼬狐猴的分类争议。
  • Figure  1.  Sketch of northern Madagascar depicting the eight Inter-River-Systems (IRS 0–VII) (A), and maximum-likelihood tree of Lepilemur spp. based on complete mitogenome sequences (B)

    In A, questionable species designations are indicated as: A=species in Andriaholinirina et al. (2006); C=species in Craul et al. (2007); L=species in Louis et al. (2006); R=species in Rabarivola et al. (2006). Red dots=sample location for this study; gray dots=additional sample locations of previous studies that support respective mitochondrial lineages; IRS VI includes Nosy Bé. In B, node support <100% ML BS is given at respective nodes; PP for all nodes is 1.0. Species names are followed by GenBank accession numbers and geographic identifiers (see Lei et al., 2017). Respective IRSs are in blue. Type specimens of L. dorsalis and L. grandidieri are highlighted in bold. Designation of L. dorsalis is according to Louis et al. (2006).

    Table  1.   Inter-River-System (IRS) model according to Craul et al. (2007) and corresponding Lepilemur species as assigned in previous studies (Andriaholinirina et al., 2006; Craul et al., 2007; Lei et al., 2017; Louis et al., 2006; Rabarivola et al., 2006; Zinner et al., 2007)

    IRSRiverAndriaholinirina et al. (2006)Louis et al. (2006)Rabarivola et al. (2006)Craul et al. (2007)Zinner et al. (2007)Lei et al. (2017)This study
    0Mahavavy –Besibokaaeeclisaeeclisaeeclisaeeclisaeeclisaeeclisaeeclis
    IBesiboka – Mahajambaedwardsiedwardsiedwardsiedwardsiedwardsiedwardsiedwardsi
    IIMahajamba – SofiaNo samplesNo samplesNo samplesottoottoottootto
    IIISofia – MaevaranoNo samplesgrewcockorumNo samplesmanasamodygrewcockorumgrewcockorumgrewcockorum
    IVMaevarano – Andranomalazasahamalazasahamalazasahamalazasahamalazasahamalazasahamalazasahamalaza
    VAndranomalaza – SambiranoNo sampledorsalismittermeieridorsalismittermeieridorsalisdorsalis
    VISambirano – MahavydorsalisNo samplesdorsalisdorsalistymerlachsoniNo samplestymerlachsoni
    VI*Nosy Bé
    dorsalistymerlachsonidorsalisdorsalistymerlachsonitymerlachsonitymerlachsoni
    VIINorth of Mahavyankaranensisankaranensisankaranensisankaranensisankaranensisankaranensisankaranensis
    *: Nosy Bé is here regarded as a part of IRS VI (see Andriaholinirina et al., 2006 and Craul et al., 2007).
    下载: 导出CSV
  • [1] Andriaholinirina N, Fausser JL, Roos C, Zinner D, Thalmann U, Rabarivola C, et al. 2006. Molecular phylogeny and taxonomic revision of the sportive lemurs (Lepilemur, Primates). BMC Evolutionary Biology, 6: 17. doi: 10.1186/1471-2148-6-17
    [2] Andriaholinirina N, Fausser JL, Roos C, Zinner D, Thalmann U, Rabarivola C, et al. 2017. Corrective paper concerning three new species of the genus Lepilemur I. Geoffroy, 1851(Mammalia). Dumerilia, 7: 62−71.
    [3] Chernomor O, von Haeseler A, Minh BQ. 2016. Terrace aware data structure for phylogenomic inference from supermatrices. Systematic Biology, 65(6): 997−1008. doi: 10.1093/sysbio/syw037
    [4] Craul M, Zimmermann E, Rasoloharijaona S, Randrianambinina B, Radespiel U. 2007. Unexpected species diversity of Malagasy primates (Lepilemur spp.) in the same biogeographical zone: a morphological and molecular approach with the description of two new species. BMC Evolutionary Biology, 7: 83. doi: 10.1186/1471-2148-7-83
    [5] Dabney J, Knapp M, Glocke I, Gansauge MT, Weihmann A, Nickel B, et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proceedings of the National Academy of Sciences of the United States of America, 110(39): 15758−15763. doi: 10.1073/pnas.1314445110
    [6] Edgar RC. 2010. Quality measures for protein alignment benchmarks. Nucleic Acids Research, 38(7): 2145−2153. doi: 10.1093/nar/gkp1196
    [7] Forbes HO. 1894. A Handbook to the Primates, Volume 1. London: W.H. Allen & Co.
    [8] Gelman A, Rubin DB. 1992. Inference from iterative simulation using multiple sequences. Statistical Science, 7(4): 457−472.
    [9] Groves CP. 2001. Primate Taxonomy. Washington, DC: Smithsonian Institution Press.
    [10] Groves CP. 2005. Order primates. In: Wilson DE, Reeder DM. Mammal Species of the World: A Taxonomic and Geographic Reference. 3rd ed. Baltimore, MD: Johns Hopkins University Press.
    [11] Jenkins PD. 1987. Catalogue of Primates in the British Museum (Natural History) and elsewhere in the British Isles. Part IV: Suborder Strepsirrhii, including the Subfossil Madagascan Lemurs and Family Tarsiidae. London: British Museum (Natural History).
    [12] Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods, 14(6): 587−589. doi: 10.1038/nmeth.4285
    [13] Kappeler PM, Rasoloarison RM, Razafimanantsoa L, Walter L, Roos C. 2005. Morphology, behaviour and molecular evolution of giant mouse lemurs (Mirza spp.) Gray, 1870, with description of a new species. Primate Report, 71: 3−26.
    [14] Larsson A. 2014. AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics, 30(22): 3276−3278. doi: 10.1093/bioinformatics/btu531
    [15] Lei RH, Frasier CL, Hawkins MTR, Engberg SE, Bailey CA, Johnson SE, et al. 2017. Phylogenomic reconstruction of sportive lemurs (genus Lepilemur) recovered from mitogenomes with inferences for Madagascar biogeography. Journal of Heredity, 108(2): 107−119.
    [16] Louis EE Jr, Engberg SE, Lei R, Geng H, Sommer JA, Randriamampionona R, et al. 2006. Molecular and morphological analyses of the sportive lemurs (Family Megaladapidae: Genus Lepilemur) reveals 11 previously unrecognized species. Special Publications, Museum of Texas Tech University, 49: 1−47.
    [17] Louis EE Jr, Bailey CA, Sefczek TM, Raharivololona B, Schwitzer C, Ratsimbazafy J, et al. 2020(2021-06-01). Lepilemur dorsalis. The IUCN Red List of Threatened Species 2020: e.T11616A115565969. https://dx.doi.org/10.2305/IUCN.UK.2020-2.RLTS.T11616A115565969.en.
    [18] Minh BQ, Nguyen MAT, von Haeseler A. 2013. Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution, 30(5): 1188−1195. doi: 10.1093/molbev/mst024
    [19] Mittermeier RA, Louis EE Jr, Richardson M, Schwitzer C, Langrand O, Rylands AB, et al. 2010. Lemurs of Madagascar. 3rd ed. Arlington, VA: Conservation International.
    [20] Mittermeier RA, Rylands AB, Wilson DE. 2013. Handbook of the Mammals of the World. Volume 3: Primates. Bardelona: Lynx Edicions.
    [21] Napier JR, Napier PH. 1967. A Handbook of Living Primates. London: Academic Press.
    [22] Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32(1): 268−274. doi: 10.1093/molbev/msu300
    [23] Petter JJ, Albignac R, Rumpler Y. 1977. Mammifères lémuriens (Primates prosimiens). Faune de Madagascar. Volume 44. Paris: ORSTOM CNRS, 1-513.
    [24] Rabarivola C, Zaramody A, Fausser JL, Andriaholinirina N, Roos C, Zinner D, et al. 2006. Cytogenetic and molecular characteristics of a new species of sportive lemur from Northern Madagascar. Lemur News, 11: 45−49.
    [25] Raupach MJ, Amann R, Wheeler QD, Roos C. 2016. The application of ”-omics” technologies for the classification and identification of animals. Organisms Diversity & Evolution, 16(1): 1−12.
    [26] Rohland N, Siedel H, Hofreiter M. 2004. Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens. BioTechniques, 36(5): 814−821. doi: 10.2144/04365ST05
    [27] Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, et al. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61(3): 539−542. doi: 10.1093/sysbio/sys029
    [28] Rowe N. 1996. The Pictorial Guide to the Living Primates. East Hampton, NY: Pogonias Press.
    [29] Rowe N, Myers M. 2016. All the World's Primates. East Hampton, NY: Pogonias Press.
    [30] Swofford DL. 2002. PAUP*: Phylogenetic Analysis Using Parsimony (*and other Methods). Version 4. Sunderland, MA: Sinauer Associates.
    [31] Tattersall I. 1982. The Primates of Madagascar. New York, NY: Columbia University Press.
    [32] Zinner D, Roos C, Fausser JL, Groves C, Rumpler Y. 2007. Disputed taxonomy classification of sportive lemurs (Lepilemur) in NW Madagascar. Lemur News, 12: 53−56.
  • 加载中
图(1) / 表(1)
计量
  • 文章访问数:  700
  • HTML全文浏览量:  334
  • PDF下载量:  192
  • 被引次数: 0
出版历程
  • 收稿日期:  2021-05-05
  • 录用日期:  2021-06-10
  • 网络出版日期:  2021-06-11
  • 刊出日期:  2021-07-18

目录

    /

    返回文章
    返回