Volume 31 Issue 4
Jul.  2010
Turn off MathJax
Article Contents
ZHAO Dan-Tong, LIU Guang-Chun, WANG Jian-Feng. Phylogenetic Relationships among Some Chinese Genera of Phoridae Based on Mitochondrial 12S and 16S rRNA Gene Sequences. Zoological Research, 2010, 31(4): 370-374. doi: 10.3724/SP.J.1141.2010.04370
Citation: ZHAO Dan-Tong, LIU Guang-Chun, WANG Jian-Feng. Phylogenetic Relationships among Some Chinese Genera of Phoridae Based on Mitochondrial 12S and 16S rRNA Gene Sequences. Zoological Research, 2010, 31(4): 370-374. doi: 10.3724/SP.J.1141.2010.04370

Phylogenetic Relationships among Some Chinese Genera of Phoridae Based on Mitochondrial 12S and 16S rRNA Gene Sequences

doi: 10.3724/SP.J.1141.2010.04370
Funds:  null
More Information
  • Author Bio:

    ZHAO Dan-Tong

  • Corresponding author: LIU Guang-Chun
  • Received Date: 2010-01-19
  • Rev Recd Date: 2010-04-27
  • Publish Date: 2010-08-22
  • The phylogenetic relationships among 14 Chinese genera of Phoridae were reconstructed based on concatenated sequences of the mitochondrial 12S and 16S rRNA genes using maximum parsimony, maximum likelihood and Bayesian methods. The alignment of the concatenated sequences spanned 819 sites including 277 variable sites, of which 200 were parsimony-informative. The sequences showed a 77.7% A+T bias. The phylogenetic analysis showed that the Phoridae was monophyletic. It was shown that the involved genera in the study clustered into monophyletic Phorinae and Metopininae. The genera Diplonevra and Dohrniphora were closely related to each other. The relationships among Anevrina, Conicera and Spiniphora were also closer. The genera Metopina and Puliciphora proved to be reciprocal sister group and the cluster analysis showed the close relationship between Gymnophora and Phalacrotophora.
  • loading
  • [1]
    Brown BV. 1992. Generic revision of Phoridae of the Nearctic Region and phylogenetic classification of Phoridae, Sciadoceridae, and Ironomyiidae (Dipt.: Phoridae)[J]. Mem Entomol Soc Can, 164: 1-144.Brown BV. 2004. Revision of the subgenus Udamochiras of Melaloncha bee-killing flies. (Diptera: Phoridae: Metopininae)[J]. Zool J Linn Soc, 140(1): 1-42.Cheng XY, Zhou HZ, Zhang GX. 2000. Perspective of molecular biological techniques applied in insect systematics[J]. Acta Zootaxonom Sin, 25(2): 121-133. [成新跃, 周红章, 张广学. 2000. 分子生物学技术在昆虫系统学研究中的应用. 动物分类学报, 25(2): 121-133.]Chen AH, Jiang GF. 2004. Phylogenetic relationships among 12 species of Tetrigidae (Orthoptera: Tetrigoidea) based on partial sequences of 12S and 16S ribosomal RNA[J]. Zool Res, 25(6): 510-514.[陈爱辉, 蒋国芳. 2004. 基于线粒体12S和16S rRNA部分序列探讨蚱科12种的系统发育关系. 动物学研究, 25(6): 510-514.]Cook CE, Austin JJ, Disney RHL. 2004. A mitochondrial 12S and 16S rRNA phylogeny of critical genera of the Phoridae (Diptera) and related families of Aschiza[J]. Zootaxa, 593: 1-11.Disney RHL. 1991. Convergent and parallel evolution and the supra-generic classification of the Phoridae (Diptera) [J]. G Ital Entomol, 5: 263-287.Disney RHL, Cumming MS. 1992. Abolition of Alamirinae and ultimate rejection of Wasmann's theory of hermaphroditism in Termitoxeniinae (Diptera: Phoridae) [J]. Bonn Zool Beitr, 43: 145-154.Disney RHL. 1994. Continuing the debate relating to the phylogenetic reconstruction of the Phoridae (Diptera) [J]. G Ital Entomol, 7: 103-117.Disney RHL. 2003. The dorsal abdominal glands and the higher classification of the Phoridae (Diptera) [J]. Zootaxa, 293: 1-16.Han HY, Ro KE. 2009. Molecular phylogeny of the family Tephritidae (Insecta: Diptera): New insight from combined analysis of the mitochondrial 12S, 16S, and COII genes[J]. Mol Cells, 27(1): 55-66.Hennig W. 1966. Phylogenetic Systematics[M]. Urbana: University of Illinois Press.Hennig W. 1973. Diptera (Zweiflügler) [M]// Helmcke JG, Starck D, W ermuth H. Handbuch der Zoologie IV. Berlin: Walter De Gruyter.Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogeny[J]. Bioinformatics, 17(8): 754-755.Kambhampati S, Smith PT. 1995. PCR primers for the amplification of four insect mitochondrial gene fragments[J]. Insect Mol Biol, 4: 233-236.Kronforst MR, Folgarait PJ, Patrock RJW, Gilbert LE. 2007. Genetic differentiation between body size biotypes of the parasitoid fly Pseudacteon obtusus (Diptera: Phoridae) [J]. Mol Phylogenet Evol, 43(3): 1178-1184.Kumar S, Tamura K, Nei M. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment[J]. Brief Bioinform, 5(2): 150-163.Liu GC. 2001. A Taxonomic Study of Chinese Phorid Flies Diptera: Phoridae: part 1 [M]. Shenyang: Northeastern University Press. [刘广纯. 2001. 中国蚤蝇分类: 上册[M].. 沈阳: 东北大学出版社.]Marquez JG, Cummings MA, Krafsur ES. 2007. Phylogeography of stable fly (Diptera: Muscidae) estimated by diversity at ribosomal 16S and cytochrome oxidase I mitochondrial genes [J]. J Med Entomol, 44(6): 998-1008.Nagaraja, Nagaraju J, Ranganath HA. 2004. Molecular phylogeny of the nasuta subgroup of Drosophila based on 12S rRNA, 16S rRNA and CoI mitochondrial genes, RAPD and ISSR polymorphisms[J]. Genes Genet Syst, 79(5): 293-299.Posada D, Crandall KA. 1998. Modeltest: Testing the model of DNA substitution[J]. Bioinformatics, 14 (9): 817-818.Rohacek J, Tothova A, Vanhara J. 2009. Phylogeny and affiliation of European Anthomyzidae (Diptera) based on mitochondrial 12S and 16S rRNA[J]. Zootaxa, 2054: 49-58.Schmitz H. 1929. Revision der Phoriden [M]. Berlin und Bonn: Fred. Dummilers Verlag.Simon C, Frati F, Beckenbach A, Crespi B, Liu H, Flook P. 1994. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers[J]. Ann Entomol Soc Am, 87: 651-701.Swofford DL. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods: beta version[M]. Sunderland: Sinauer Associates.Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools[J]. Nucleic Acids Res, 24: 4876-4882.Xia X, Xie Z. 2001. DAMBE: Data analysis in molecular biology and evolution[J]. J Hered, 92: 371-373.
  • Relative Articles

    [1] Than Zaw, Paw Lay, Parinya Pawangkhanant, JVladislav A. Gorin, Nikolay A. Poyarkov, Jr.. A new species of Crocodile Newt, genus Tylototriton (Amphibia, Caudata, Salamandridae) from the mountains of Kachin State, northern Myanmar. Zoological Research, 2019, 40(3): 151-174.  doi: 10.24272/j.issn.2095-8137.2019.043
    [2] Nikolay A. Poyarkov, Jr., Ivan I. Kropachev, Svetlana S. Gogoleva, Nikolai L. Orlov. A new species of the genus Theloderma Tschudi, 1838 (Amphibia: Anura: Rhacophoridae) from Tay Nguyen Plateau, central Vietnam. Zoological Research, 2018, 39(3): 158-184.  doi: 10.24272/j.issn.2095-8137.2018.018
    [3] Bo-Rong LU, Ming-Zhen MA, Feng GAO, Yu-Hong SHI, Xiang-Rui CHEN. Morphology and molecular phylogeny of two colepid species from China, Coleps amphacanthus Ehrenberg, 1833 and Levicoleps biwae jejuensis Chen et al., 2016 (Ciliophora, Prostomatida). Zoological Research, 2016, 37(3): 176-185.  doi: 10.13918/j.issn.2095-8137.2016.3.176
    [4] Chatmongkon SUWANNAPOOM, Zhi-Yong YUAN, Nikolay A. POYARKOV Jr., Fang YAN, Somboon KAMTAEJA, Robert W. MURPHY, Jing CHE. A new species of genus Fejervarya (Anura: Dicroglossidae) from northern Thailand. Zoological Research, 2016, 37(6): 327-337.  doi: 10.13918/j.issn.2095-8137.2016.6.327
    [5] Yong-Gui MA, Yuan HUANG, Fu-Min LEI. Sequencing and phylogenetic analysis of the Pyrgilauda ruficollis (Aves, Passeridae) complete mitochondrial genome. Zoological Research, 2014, 35(2): 81-91.  doi: 10.11813/j.issn.0254-5853.2014.2.081
    [6] Jingyang HU, Yaping ZHANG, Li YU. Summary of Laurasiatheria (Mammalia) Phylogeny. Zoological Research, 2012, 33(E5-6): 65-74.  doi: 10.3724/SP.J.1141.2012.E05-06E65
    [7] LIU Dian-feng, DONG Zi-mei, ZHANG Da-yu, GU Yan-ze, GUO Pei-jun, HAN Rui-hua. Molecular Phylogeny of the Higher Category of Acrididae (Orthoptera: Acridoidea). Zoological Research, 2008, 29(6): 585-591.  doi: 10.3724/SP.J.1141.2008.06585
    [8] GONG Ying-chun, YU Yu-he, *. Progress in the Taxonomy and Phylogeny of Trichodinids. Zoological Research, 2007, 28(2): 217-224.
    [9] YU Guo-hua, RAO Ding-qi, *, YANG Jun-xing, *, ZHANG Ming-wang. Non-monophyly of Rhacophorus rhodopus, Theloderma and Philautus albopunctatus Inferred from Mitochondrial 16S rRNA Gene Sequences. Zoological Research, 2007, 28(4): 437-442.
    [10] WU Gui-sheng , PANG Jun-feng , ZHANG Ya-ping , *. Molecular Phylogeny and Phylogeography of Suidae. Zoological Research, 2006, 27(2): 197-201.
    [11] GU Ze-mao, GONG Xiao-ling, WANG Jiang-guo. Progress of Phylogeny in Trypanosomes. Zoological Research, 2005, 26(2): 214-219.
    [12] JIN Yi-wen, JIANG Jian-ping, XIE Feng, ZHENG Zhong-hua, XU Jun-xiao. Phylogenetic Relationships Among Some Species of Amolops Inferred from 12S and 16S rRNA Gene Sequences. Zoological Research, 2005, 26(1): 61-68.
    [13] ZHENG Yu-chi, MO Bang-hui, LIU Zhi-jun, ZENG Xiao-mao. Phylogenetic Relationships of Megophryid Genera (Anura:Megophryidae) Based on Partial Sequences of Mitochondrial 16 S rRNA Gene. Zoological Research, 2004, 25(3): 205-213.
    [14] CHEN Ai-hui, JIANG Guo-fang. Phylogenetic Relationships among 12 Species of Tetrigidae (Orthoptera:Tetrigoidea) Based on Partial Sequences of 12S and 16S Ribosomal RNA. Zoological Research, 2004, 25(6): 510-514.
    [15] JIANG Jian-ping, YUAN Fu-rong, XIE Feng, ZHENG Zhong-hua. Phylogenetic Relationships of Some Species and Genera in Megophryids Inferred from Partial Sequences of Mitochondrial 12S and 16S rRNA Genes. Zoological Research, 2003, 24(4): 241-248.
    [16] LUAN Yun-xia, XIE Rong-dong, YIN Wen-ying. Preliminary Study on Phylogeny of Diplura. Zoological Research, 2002, 23(2): 149-154.
    [17] QIU Gao-feng, CHANG Lin-rui, XU Qiao-ting, FANG Xiong-ying, LOU Yun-dong. Intraspecific DNA Sequence Polymorphism in The Mitochondrial 16 S rRNA Gene of The Chinese Shrimp,Penaeus chinensis. Zoological Research, 2000, 21(1): 35-40.
    [18] YANG Guang, LIU Shan, JI Guo-Qing, ZHOU Kai-Ya, Ricardo Bastida, Laura Rivero. Sequence Variation of Mitochondrial 12S rRNA Gene and Inferred Molecular Systematics of River Dolphins. Zoological Research, 2000, 21(6): 425-431.
    [19] LIU Guang-chun, ZENG Qing-qi. A Further New Species of Trophithauma From China (Diptera:Phoridae). Zoological Research, 1995, 16(4): 349-351.
    [20] KUANG Pu-ren. Phylogeny of The Family Lernaeidae (Parasitic Copepoda). Zoological Research, 1993, 14(4): 299-306.
  • 加载中


    通讯作者: 陈斌, bchen63@163.com
    • 1. 

      沈阳化工大学材料科学与工程学院 沈阳 110142

    1. 本站搜索
    2. 百度学术搜索
    3. 万方数据库搜索
    4. CNKI搜索

    Article Metrics

    Article views (1587) PDF downloads(1863) Cited by()
    Proportional views


    DownLoad:  Full-Size Img  PowerPoint