Zoological Research ›› 2012, Vol. 33 ›› Issue (3): 319-328.doi: 10.3724/SP.J.1141.2012.03319

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Phylogenetic relationship among some groups of orthopteran based on complete sequences of the mitochondrial COI gene

LÜ Hong-Juan, HUANG Yuan   

  1. College of Life Sciences, Shaanxi Normal University, Xi’an 710062, China
  • Received:2011-12-19 Revised:2012-03-20 Online:2012-06-22 Published:2012-06-22

Abstract:

Complete sequences of the COI gene were used to reconstruct the phylogenetic relationship among 56 species from Orthoptera. We also analyzed the reliability of Orthoptera phylogenetic relationship using translated amino acid sequences of the COI genes. The COI sequences were divided into three data sets on the basis of different codon positions to calculate the Partitioned Bremer support (PBS), and to test the phylogenetic signal in different codon positions of protein-coding genes. The result supports the monophyly of Caelifera and Ensifera; but the monophyly of Acrididae, Catantopidae, Oedipodidae, Arcypteridae and Gomphoceridae are not supported. The P-distances among families vary from 0.107 to 0.153, which are smaller than those of other families, being consist with the classification that these 5 families should be merged into one family (Acrididae). Chrotogonidae and Pyrgomorphidae belong to the superfamily Pyrgomorphoidea. Pamphagidae should be a family alone consistent with Otte’s taxonomic system. According to the PBS values, the 3rd and 1st codon positions contribution more for the Phylogenetic tree branches than the 2nd, and longer sequences contain more informative sites. We further demonstrated that it is feasible for phylogenetic studies at family level to use the genetic distances among COI sequences from different species of Orthopera.

CLC Number: 

  • Q969.26

[1] Abascal F, Posada D, Zardoya R. 2007. MtArt: A new model of amino acid replacement for Arthropoda [J]. Mol Biol Evol, 24(1): 1-5.
[2] Abascal F, Zardoya R, Posada D. 2009. ProtTest: Selection of best-fit models of protein evolution version 2.4 [J]. Bioinformatics, 21(9): 2104-2105.
[3] Bonfield JK, Staden R. 2002. ZTR: A new format for DNA sequence trace data[J]. Bioinformatics, 18(1): 3-10.
[4] Ding FM, Huang Y. 2008. Molecular evolution and phylogenetic analysis of some species of Oedipodidae (Orthoptera: Caelifera) in China based on complete mitochondrial ND2 gene[J]. Acta Entomol Sin, 51(1): 55-60. [丁方美, 黄原. 2008. 基于线粒体ND2 基因的中国斑翅蝗科部分种 类分子系统学研究(直翅目: 蝗总科). 昆虫学报, 51(1): 55-60.]
[5] Fenn JD, Song H, Cameron SL, Whiting MF. 2008. A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data [J]. Mol Phylogenet Evol, 49(1): 59-68.
[6] Huang DW, Meier R, Todd PA. Chou LM. 2008. Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding [J]. J Mol Evol, 66(2): 167-174.
[7] Kumar S, Nei M, Dudley J, Tamura KK. 2008. MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences [J].Brief Bioinform, 9(4): 299-306.
[8] Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA,McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X version 2.0 [J]. Bioinformatics, 23(21): 2947-2948.
[9] Liang G, Li T, Yin ZH, Lei FM. 2008. Molecular phylogenetic analysis of some Fringillidae species based on mitochondrial CoI gene sequences[J]. Zool Res, 29(15):465-475. [梁刚, 李涛, 尹祚华, 雷富 民. 2008. 利用CoI 基因序列对雀科鸟类的分子系统发育关系初探. 动物学研究, 29(15):465-475.]
[10] Liu DF, Jiang GF. 2005. Molecular phylogenetic analysis of Acridoidea based on 18S rDNA with a discussion on its taxonomic system [J]. Acta Entomol Sin, 48(2): 232-241. [刘殿锋, 蒋国芳. 2005. 基于18S rDNA 的蝗总科分子系统发育关系研究及分类系统探讨. 昆虫学报, 48(2): 232-241.]
[11] Liu XW, Jin XB. 1992-1993. List of Chinese Stenopelmatoidea and Terrigonioidea (Grylloptera). Contr. Shanghai Inst Entomol, 11: 99-118. [刘宪伟, 金杏宝. 1992-1993. 中国螽蟖名录. 昆虫学研究集刊, 11: 99-118.]
[12] Liu Y, Song Y, Li XY. 2010. DNA barcode technology in insect molecular application about mitochondrial COI gene [J]. Plant Quarantine, (2): 46-50. [刘勇, 宋毓, 李晓宇. 2010. 基于线粒体COI 基因的DNA 条 形码技术在昆虫分子鉴定中的应用. 植物检疫, (2): 46-50.]
[13] Nylander JAA. 2004. MrModeltest v2.2. Program distributed by the author[EB/OL]. Evolutionary Biology Centre, Uppsala University. Otte D, Eades DC, Cigliano MM. Orthoptera Species File Online[EB/OL]. Version2.0/4.0. [2011-03-01]. < http://Orthoptera.SpeciesFile.org>.
[14] Pan CY, Hu J, Zhang X, Huang Y. 2006. The DNA barcoding application of mtDNA COI genes in seven species of Catantopidae (Orthoptera) [J]. Entomotaxonomia, 26(2): 103-111. [潘程莹, 胡婧, 张霞, 黄原. 2006. 斑腿蝗科Catantopidae 七种蝗虫线粒体COI 基因的DNA 条形码研 究. 昆虫分类学报, 26(2): 103-111.]
[15] Posada D. 2003. Using Modeltest and PAUP* to select a model of nucleotide substitution [J]. Curr Protoc Bioinform, 6. 5. 1-6. 5. 14.
[16] Reeves JH. 1992. Heterogeneity in the substitution process of amino acid sites of proteins coded for by mitochondrial DNA [J]. J Mol Evol, 35(1): 17-31.
[17] Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models [J]. Bioinformatics, 19(12): 1572-1574.
[18] Simon C, Frati F, Beckenbach A, Crespi B, Liu H Flook P. 1994. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers [J].Ann Entomol Soc Am, 87(6): 651-701.
[19] Sorenson MD, Franzosa EA. 2007. TreeRot. v3 [M]. Boston, MA: Boston University.
[20] Stamatakis A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models [J].Bioinformatics, 22(21): 2688-2690.
[21] Sun ZL, Jiang GF, Huo GM, Liu DF. 2006. A phylogenetic analysis of six genera of Acrididae and monophyly of Acrididae in China using 16S rDNA sequences (Orthoptera, Acridoidea) [J]. Acta Zool Sin, 52(2): 302-308. [孙正莉, 蒋国芳, 霍光明, 刘殿锋. 2006. 基于16S rDNA 序列探讨中国剑角蝗科的单系性及其六属的系统发育关系. 动物 学报, 52(2): 302-308.]
[22] Swofford DL. 2002. PAUP*. Phylogenetic Analysis Using Parsimony. (*and Other Methods) [EB/OL]. Version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.
[23] Wang BX, Yang LF. 2002. Phylogenetic utilities of mitochondrial DNA sequences in the study of insect systematics[J]. Entomol Knowl, 39(2): 89-91. [王备新, 杨莲芳. 2002. 线粒体DNA 序列特点与昆虫系统学 研究. 昆虫知识, 39(2): 89-91.]
[24] Wang NX, Feng X, Jiang GF, Fang N, Xuan WJ. 2008. Molecular phylogenetic analysis of five subfamilies of the Acrididae (Orthoptera:Acridoidea) based on the mitochondrial cytochrome b and cytochrome c oxidase subunit I gene sequences [J]. Acta Entomol Sin, 51(11): 1187-1195.
[25] Wang X, Huang B. 2006. Advancement of DNA Barcoding in Animal Taxonomy [J]. Biotechnol Bull, (4): 67-71. [王鑫, 黄兵. 2006. DNA 条形编码技术在动物分类中的研究进展. 生物技术通报, (4): 67-71.]
[26] Wang XY, Zhou ZJ, Huang Y, Shi FM. 2011. The phylogenetic relationships of higher Orthopteran categories inferred from 18S rRNA gene sequences [J]. Acta Zootaxon Sin, 36(3): 627-638. [汪晓阳, 周志 军, 黄原, 石福明. 2011. 基于18S rRNA 基因序列的直翅目主要类 群系统发育关系研究. 动物分类学报, 36(3): 627-638.]
[27] Xia KL. 1958. Taxonomic Essentials on Acrididae in China[M]. Beijing: Science Press, 1-239. [夏凯龄. 1958. 中国蝗科分类概要. 北京: 科 学出版社, 1-239.]
[28] Yang DM, Lin Y. 2010. Application of mitochondrial DNA gene order in molecular systematics of insects [J]. Guangdong Agric Sci, 37(6): 188-190. [杨德明, 林杨. 2010. 线粒体DNA 基因序列在昆虫分子系 统学研究中的应用. 广东农业科学, 37(6): 188-190.]
[29] Yin XC. 1982. On the taxonomic system of Acridoidea from China [C].Acta Biologica Plateau Sinica, (1): 69-99. [印象初. 1982. 中国蝗总科 (Acridoidea)分类系统的研究. 高原生物学研究集刊, (1): 69-99.]
[30] Zhang HJ, Huo KK, Chen R. 2008. Comparison of Xia’s taxonomic systematics with Otte’s [J]. J North West Univ: Sci Online, 6(4): 0358. [张宏杰, 霍科科, 陈锐. 2008. 中国夏氏与 Daniel Otte 蝗虫分类系 统比较. 西北大学学报: 自然科学网络版, 6(4): 0358.]
[31] Zhang XJ. 2009. Study on Molecular Phylogeny of Acridoidae Based on 28SrDNA and COI Gene [D]. S.M. thesis, Shaanxi Normal University. [张小静. 2009. 基于28SrDNA 和COI 基因序列的蝗总科部分种类 分子系统学研究. 陕西师范大学.]
[32] Zheng LY, Gui H. 1999. Insect Classification [M]. Nanjing: Nanjing Normal University Press. [郑乐怡, 归鸿. 1999. 昆虫分类. 南京: 南京师范 大学出版社, 254-257.]

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